MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Actinomyces bowdenii
WMus004.1
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 457
bases: 3,191,231 bps
CDS: 2,590
rRNA: 3
Repeat region:
tmRNA: 1
tRNA: 56
misc RNA:
Total features: 2,650
Total number of protein coding genes annotated/found:
2,590
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Items 1 - 20
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Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5001|JADGKF010000009.1
SEQF5001_02650
Genome Viewer
NA
AA
189/63
29676-29864
Prokaryotic ubiquitin-like protein Pup
SEQF5001|JADGKF010000009.1
SEQF5001_02649
Genome Viewer
NA
AA
1785/595
27899-29683
Depupylase
SEQF5001|JADGKF010000009.1
SEQF5001_02648
Genome Viewer
NA
AA
1692/564
26201-27892
Proteasome-associated ATPase
SEQF5001|JADGKF010000009.1
SEQF5001_02647
Genome Viewer
NA
AA
2829/943
26010-23182
Valine--tRNA ligase
SEQF5001|JADGKF010000009.1
SEQF5001_02646
Genome Viewer
NA
AA
1485/495
23098-21614
hypothetical protein
SEQF5001|JADGKF010000009.1
SEQF5001_02645
Genome Viewer
NA
AA
1005/335
19985-20989
Catabolite control protein A
SEQF5001|JADGKF010000009.1
SEQF5001_02644
Genome Viewer
NA
AA
1812/604
18128-19939
Oligo-1%2C6-glucosidase
SEQF5001|JADGKF010000009.1
SEQF5001_02643
Genome Viewer
NA
AA
894/298
17065-17958
Trehalose transport system permease protein SugB
SEQF5001|JADGKF010000009.1
SEQF5001_02642
Genome Viewer
NA
AA
1041/347
16028-17068
Trehalose transport system permease protein SugA
SEQF5001|JADGKF010000009.1
SEQF5001_02641
Genome Viewer
NA
AA
1293/431
14572-15864
putative ABC transporter-binding protein
SEQF5001|JADGKF010000009.1
SEQF5001_02640
Genome Viewer
NA
AA
1998/666
14270-12273
Long-chain-fatty-acid--CoA ligase FadD15
SEQF5001|JADGKF010000009.1
SEQF5001_02639
Genome Viewer
NA
AA
1890/630
12214-10325
Long-chain-fatty-acid--CoA ligase FadD15
SEQF5001|JADGKF010000009.1
SEQF5001_02638
Genome Viewer
NA
AA
372/124
9894-10265
hypothetical protein
SEQF5001|JADGKF010000009.1
SEQF5001_02637
Genome Viewer
NA
AA
1299/433
8599-9897
ATP-dependent Clp protease ATP-binding subunit ClpX
SEQF5001|JADGKF010000009.1
SEQF5001_02636
Genome Viewer
NA
AA
699/233
7561-8259
ATP-dependent Clp protease proteolytic subunit 2
SEQF5001|JADGKF010000009.1
SEQF5001_02635
Genome Viewer
NA
AA
630/210
6928-7557
ATP-dependent Clp protease proteolytic subunit 1
SEQF5001|JADGKF010000009.1
SEQF5001_02634
Genome Viewer
NA
AA
1044/348
5625-6668
hypothetical protein
SEQF5001|JADGKF010000009.1
SEQF5001_02633
Genome Viewer
NA
AA
354/118
5452-5099
hypothetical protein
SEQF5001|JADGKF010000009.1
SEQF5001_02632
Genome Viewer
NA
AA
711/237
4243-4953
hypothetical protein
SEQF5001|JADGKF010000009.1
SEQF5001_02631
Genome Viewer
NA
AA
1524/508
2409-3932
Trigger factor
Items 1 - 20
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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